Rcwl,Rcwl-package | Rcwl-package |
Rcwl-package | Rcwl-package |
$-method | cwlProcess methods |
$<--method | cwlProcess methods |
+-method | cwlWorkflow function |
arguments | cwlProcess methods |
arguments<- | cwlProcess methods |
baseCommand | cwlProcess methods |
baseCommand<- | cwlProcess methods |
CondaTool | CWL requirements functions |
cwl-requirements | CWL requirements functions |
cwlClass | cwlProcess methods |
cwlClass<- | cwlProcess methods |
cwlProcess | Parameters for CWL |
cwlProcess-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
cwlProcess-methods | cwlProcess methods |
cwlShiny | cwlShiny |
cwlStep | cwlStep function |
cwlStep-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
cwlStepList | All classes defined in the package of 'Rcwl' and the class constructor functions. |
cwlStepList-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
cwlVersion | cwlProcess methods |
cwlVersion<- | cwlProcess methods |
cwlWorkflow | cwlWorkflow function |
cwlWorkflow-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
cwlWorkflow-methods | cwlWorkflow methods |
Dirent | CWL requirements functions |
extensions | cwlProcess methods |
extensions<- | cwlProcess methods |
hints | cwlProcess methods |
hints<- | cwlProcess methods |
InputArrayParam | All classes defined in the package of 'Rcwl' and the class constructor functions. |
InputArrayParam-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
InputParam | All classes defined in the package of 'Rcwl' and the class constructor functions. |
InputParam-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
InputParamList | All classes defined in the package of 'Rcwl' and the class constructor functions. |
InputParamList-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
inputs | cwlProcess methods |
install_udocker | install udocker |
OutputArrayParam | All classes defined in the package of 'Rcwl' and the class constructor functions. |
OutputArrayParam-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
OutputParam | All classes defined in the package of 'Rcwl' and the class constructor functions. |
OutputParam-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
OutputParamList | All classes defined in the package of 'Rcwl' and the class constructor functions. |
OutputParamList-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
outputs | cwlProcess methods |
plotCWL | plotCWL |
Rcwl | Rcwl-package |
readCWL | Read CWL Function to read CWL command or workflow files. |
requireDocker | CWL requirements functions |
requireEnvVar | CWL requirements functions |
requireInitialWorkDir | CWL requirements functions |
requireJS | CWL requirements functions |
requireManifest | CWL requirements functions |
requirements | cwlProcess methods |
requirements<- | cwlProcess methods |
requireMultipleInput | CWL requirements functions |
requireNetwork | CWL requirements functions |
requireResource | CWL requirements functions |
requireRscript | CWL requirements functions |
requireScatter | CWL requirements functions |
requireShellCommand | CWL requirements functions |
requireShellScript | CWL requirements functions |
requireSoftware | CWL requirements functions |
requireStepInputExpression | CWL requirements functions |
requireSubworkflow | CWL requirements functions |
runCWL | run cwlProcess |
runCWLBatch | run CWL with batchtools |
runs | cwlWorkflow methods |
ShellScript | CWL requirements functions |
short | cwlProcess methods |
stdOut | cwlProcess methods |
stdOut<- | cwlProcess methods |
stepInParam | All classes defined in the package of 'Rcwl' and the class constructor functions. |
stepInParam-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
stepInParamList | All classes defined in the package of 'Rcwl' and the class constructor functions. |
stepInParamList-class | All classes defined in the package of 'Rcwl' and the class constructor functions. |
steps | cwlWorkflow function |
steps<- | cwlWorkflow function |
writeCWL | Write CWL |