PROspective Power Evaluation for RNAseq


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Documentation for package ‘PROPER’ version 1.26.0

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bottomly Some existing RNA-seq and gene expression microarray data
cheung Some existing RNA-seq and gene expression microarray data
comparePower Compute the power-related quantities from simulation results
estParam estimate simulation parameters from a count table
GE.human Some existing RNA-seq and gene expression microarray data
gilad Some existing RNA-seq and gene expression microarray data
maqc Some existing RNA-seq and gene expression microarray data
param Some existing RNA-seq and gene expression microarray data
pbmc Some existing RNA-seq and gene expression microarray data
plotAll Plot the stratified curves for power-related quantities
plotFDcost Plot the stratified curves for power-related quantities
plotFDR Plot the stratified curves for power-related quantities
plotPower Plot the stratified curves for power-related quantities
plotPowerAlpha Plot the stratified curves for power-related quantities
plotPowerFD Plot the stratified curves for power-related quantities
plotPowerHist Plot the histogram of power
plotPowerTD Plot the stratified curves for power-related quantities
power.seqDepth Estimate the marginal power under different sequencing depth
RNAseq.SimOptions.2grp Set up options for simulating RNA-seq data in two-group comparison.
runSims Run a number of RNA-seq simulations and DE detections
simRNAseq Simulate RNA-seq count data
summaryPower Generate a summary table for power analysis result