A B C D E F G I K L M P Q R S misc
AddMeta | AddMeta |
AddMeta-method | AddMeta |
BIC_LTMG | BIC_LTMG BIC_LTMG |
BIC_ZIMG | BIC_ZIMG fits different model BIC_ZIMG fits different model |
CalBinaryMultiSignal | CalBinaryMultiSignal |
CalBinaryMultiSignal-method | CalBinaryMultiSignal |
CalBinarySingleSignal | CalBinarySingleSignal |
CalBinarySingleSignal-method | CalBinarySingleSignal |
CLUSTERING | Packaging clustering method This function is used for choosing clustering method |
CreateIRISFGMObject | CreateIRISFGMObject |
DimReduce-class | Create DimReduce object |
DotPlotPathway | DotPlotPathway |
DotPlotPathway-method | DotPlotPathway |
example_object | Example object. |
FindClassBasedOnMC | FindClassBasedOnMC |
FindClassBasedOnMC-method | FindClassBasedOnMC |
FindGlobalMarkers | FindGlobalMarkers |
FindGlobalMarkers-method | FindGlobalMarkers |
FindMarker | FindMarker |
FindMarker-method | FindMarker |
Fit_LTMG | Fit_LTMG Fit_LTMG |
GetBinaryMultiSignal | GetBinaryMultiSignal |
GetBinaryMultiSignal-method | GetBinaryMultiSignal |
GetBinarySingleSignal | GetBinarySingleSignal |
GetBinarySingleSignal-method | GetBinarySingleSignal |
GetLTMGmatrix | GetLTMGmatrix |
GetLTMGmatrix-method | GetLTMGmatrix |
getMeta | getMeta |
getMeta-method | getMeta |
Global_Zcut | Global_Zcut create Zcut Global_Zcut create Zcut |
GRAPH | generate graph |
InverseMillsRatio | Title Title |
IRISFGM-class | IRISFGM |
KS_LTMG | KS_LTMG KS_LTMG |
KS_ZIMG | KS_ZIMG KS_ZIMG |
LogSeparateKRpkmNew | Title Title |
LogSeparateKRpkmNewLR | LogSeparateKRpkmNewLR |
LTMG | LTMG LTMG |
MCL | MCL clustering MCL clustering |
MINUS | MINUS MINUS |
MIN_return | MIN_return MIN_return |
Pi_Zj_Zcut_new | Pi_Zj_Zcut_new Pi_Zj_Zcut_new |
PlotDimension | PlotDimension |
PlotDimension-method | PlotDimension |
PlotHeatmap | PlotHeatmap |
PlotHeatmap-method | PlotHeatmap |
PlotMarkerHeatmap | PlotMarkerHeatmap will visualize global marker This function will generate global marker gene heatmap |
PlotMeta | PlotMeta |
PlotMeta-method | PlotMeta |
PlotModuleNetwork | PlotModuleNetwork |
PlotModuleNetwork-method | PlotModuleNetwork |
PlotNetwork | PlotNetwork |
PlotNetwork-method | PlotNetwork |
ProcessData | ProcessData |
ProcessData-method | ProcessData |
Pure_CDF | Pure_CDF Pure_CDF |
qubic | qubic |
ReadFrom10X_folder | ReadFrom10X_folder |
ReadFrom10X_folder-method | ReadFrom10X_folder |
ReadFrom10X_h5 | ReadFrom10X_h5 |
ReadFrom10X_h5-method | ReadFrom10X_h5 |
RunBicluster | RunBicluster |
RunBicluster-method | RunBicluster |
RunClassification | RunClassification |
RunClassification-method | RunClassification |
RunDimensionReduction | RunDimensionReduction |
RunDimensionReduction-method | RunDimensionReduction |
RunDiscretization | RunDiscretization |
RunDiscretization-method | RunDiscretization |
RunLTMG | RunLTMG |
RunLTMG-method | RunLTMG |
RunPathway | RunPathway |
RunPathway-method | RunPathway |
SC | spectral Clustering method spectral Clustering method |
SeparateKRpkmNew | SeparateKRpkmNew SeparateKRpkmNew |
SeparateKRpkmNew2 | SeparateKRpkmNew2 SeparateKRpkmNew2 |
SeparateKRpkmNewLR | SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes Calcuate the LTMG_2LR for some genes |
SeparateKRpkmNewLRPlus | SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes Calcuate the LTMG_2LR for some genes |
SeparateKRpkmNewp | Title Title |
State_return | State_return State_return |
SubsetData | SubsetData |
SubsetData-method | SubsetData |
.addMeta | AddMeta |
.CalBinaryMultiSignal | CalBinaryMultiSignal |
.CalBinarySingleSignal | CalBinarySingleSignal |
.dotPlotPathway | DotPlotPathway |
.final | FindClassBasedOnMC |
.findglobalMarkers | FindGlobalMarkers |
.findMarker | FindMarker |
.generateNetObject | GenerateNetObject Generate Net Object for the network use. |
.GetBinaryMultiSignal | GetBinaryMultiSignal |
.GetBinarySingleSignal | GetBinarySingleSignal |
.getBlock | getblock function |
.GetLTMGmatrix | GetLTMGmatrix |
.getmeta | getMeta |
.IDConvert | convert ID convert ID |
.plotDimension | PlotDimension |
.plotHeatmap | PlotHeatmap |
.plotMeta | PlotMeta |
.plotmodulenetwork | PlotModuleNetwork |
.processData | ProcessData |
.runBicluster | RunBicluster |
.runBiclusterBaseOnDiscretization | Run Discretization Generate temporal discretized file |
.runBiclusterBaseOnLTMG | RunBicusterBaseOnLTMG |
.runClassification | RunClassification |
.runDimensionReduction | RunDimensionReduction |
.runDiscretization | RunDiscretization |
.RunGO | RunGO RunGO |
.RunKEGG | RunKEGG RunKEGG |
.RunLTMG | RunLTMG |
.runPathway | RunPathway |
.separateBic | separateBic separate biclusters |
.subset_data | SubsetData |