Package: sitePath
Type: Package
Title: Phylogenetic pathway–dependent recognition of fixed
        substitutions and parallel mutations
Version: 1.10.0
Authors@R: c(person("Chengyang", "Ji",
                    email = "chengyang.ji12@alumni.xjtlu.edu.cn",
                    role = c("aut", "cre", "cph"),
                    comment = c(ORCID = "0000-0001-9258-5453")),
             person("Hangyu", "Zhou",
                    email = "zhy@ism.cams.cn",
                    role = c("ths")),
             person("Aiping", "Wu",
                    email = "wap@ism.cams.cn",
                    role = c("ths")))
Description: The package does hierarchical search for fixation and parallel
    mutations given multiple sequence alignment and phylogenetic tree. The
    package also provides visualization of these mutations on the tree.
License: MIT + file LICENSE
Depends: R (>= 4.1)
Imports: RColorBrewer, Rcpp, ape, aplot, ggplot2, ggrepel, ggtree,
        graphics, grDevices, gridExtra, methods, parallel, seqinr,
        stats, tidytree, utils
Suggests: BiocStyle, devtools, knitr, magick, rmarkdown, testthat
LinkingTo: Rcpp
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://wuaipinglab.github.io/sitePath/
BugReports: https://github.com/wuaipinglab/sitePath/issues
biocViews: Alignment, MultipleSequenceAlignment, Phylogenetics, SNP,
        Software
git_url: https://git.bioconductor.org/packages/sitePath
git_branch: RELEASE_3_14
git_last_commit: 0dde8bd
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: yes
Packaged: 2021-10-27 03:31:13 UTC; biocbuild
Author: Chengyang Ji [aut, cre, cph] (<https://orcid.org/0000-0001-9258-5453>),
  Hangyu Zhou [ths],
  Aiping Wu [ths]
Maintainer: Chengyang Ji <chengyang.ji12@alumni.xjtlu.edu.cn>
Built: R 4.1.1; x86_64-apple-darwin17.0; 2021-10-27 17:10:28 UTC; unix
