Package: recountmethylation
Version: 1.4.0
Title: Access and analyze DNA methylation database compilations
Authors@R: c(person(c("Sean", "K"), "Maden", role = c("cre", "aut"),
        email = "maden@ohsu.edu", comment = c(ORCID = "0000-0002-2212-4894")),
    person("Reid F", "Thompson", role = "aut", comment = c(ORCID = "0000-0003-3661-5296")),
    person("Kasper D", "Hansen", role = "aut", email = "hansen@jhsph.edu", comment = c(ORCID = "0000-0003-0086-0687")),
    person("Abhinav", "Nellore", role = "aut", email = "nellore@ohsu.edu", comment = c(ORCID = "0000-0001-8145-1484")))
Description: Access cross-study compilations of DNA methylation array databases. Database files can be downloaded and accessed using provided
    functions. Background about database file types (HDF5 and HDF5-SummarizedExperiment),
    SummarizedExperiment classes, and examples for data handling, validation, and analyses,
    can be found in the package vignettes. Note the disclaimer on package load, and consult
    the main manuscript for further info.
License: Artistic-2.0
Encoding: UTF-8
URL: https://github.com/metamaden/recountmethylation
BugReports: https://github.com/metamaden/recountmethylation/issues
Depends: R (>= 4.0.0)
Imports: minfi, HDF5Array, rhdf5, S4Vectors, utils, methods, RCurl,
        R.utils, BiocFileCache
Suggests: knitr, testthat, ggplot2, gridExtra, rmarkdown, BiocStyle,
        GenomicRanges, limma, ExperimentHub, AnnotationHub
VignetteBuilder: knitr
biocViews: DNAMethylation, Epigenetics, Microarray, MethylationArray,
        ExperimentHub
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/recountmethylation
git_branch: RELEASE_3_14
git_last_commit: 13a580a
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 02:38:59 UTC; biocbuild
Author: Sean K Maden [cre, aut] (<https://orcid.org/0000-0002-2212-4894>),
  Reid F Thompson [aut] (<https://orcid.org/0000-0003-3661-5296>),
  Kasper D Hansen [aut] (<https://orcid.org/0000-0003-0086-0687>),
  Abhinav Nellore [aut] (<https://orcid.org/0000-0001-8145-1484>)
Maintainer: Sean K Maden <maden@ohsu.edu>
Built: R 4.1.1; ; 2021-10-27 16:51:23 UTC; unix
