powerTCR

DOI: 10.18129/B9.bioc.powerTCR    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see powerTCR.

Model-Based Comparative Analysis of the TCR Repertoire

Bioconductor version: 3.13

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

Author: Hillary Koch

Maintainer: Hillary Koch <hillary.koch01 at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("powerTCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("powerTCR")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BiomedicalInformatics, Clustering, Software
Version	1.12.0
In Bioconductor since	BioC 3.7 (R-3.5) (3.5 years)
License	Artistic-2.0
Depends
Imports	cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, truncdist, vegan, VGAM
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	scRepertoire
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	powerTCR_1.12.0.tar.gz
Windows Binary	powerTCR_1.12.0.zip
macOS 10.13 (High Sierra)	powerTCR_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/powerTCR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/powerTCR
Package Short Url	https://bioconductor.org/packages/powerTCR/
Package Downloads Report	Download Stats