mumosa

DOI: 10.18129/B9.bioc.mumosa    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see mumosa.

Multi-Modal Single-Cell Analysis Methods

Bioconductor version: 3.13

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mumosa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mumosa")

 

HTML	R Script	Overview
PDF		Reference Manual

Details

biocViews	ImmunoOncology, RNASeq, SingleCell, Software
Version	1.0.0
In Bioconductor since	BioC 3.13 (R-4.1) (< 6 months)
License	GPL-3
Depends	SingleCellExperiment
Imports	stats, utils, methods, igraph, Matrix, BiocGenerics, BiocParallel, IRanges, S4Vectors, DelayedArray, DelayedMatrixStats, SummarizedExperiment, BiocNeighbors, BiocSingular, ScaledMatrix, beachmat, scuttle, metapod, scran, batchelor, uwot
LinkingTo
Suggests	testthat, knitr, BiocStyle, rmarkdown, scater, bluster, DropletUtils, scRNAseq
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/mumosa
BugReports	https://support.bioconductor.org/
Depends On Me	OSCA.advanced
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mumosa_1.0.0.tar.gz
Windows Binary	mumosa_1.0.0.zip
macOS 10.13 (High Sierra)	mumosa_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mumosa
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mumosa
Package Short Url	https://bioconductor.org/packages/mumosa/
Package Downloads Report	Download Stats