OLIN

DOI: 10.18129/B9.bioc.OLIN    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see OLIN.

Optimized local intensity-dependent normalisation of two-color microarrays

Bioconductor version: 3.13

Functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data

Author: Matthias Futschik <mfutschik at ualg.pt>

Maintainer: Matthias Futschik <mfutschik at ualg.pt>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OLIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OLIN")

 

PDF	R Script	Introduction to OLIN
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, QualityControl, Software, TwoChannel, Visualization
Version	1.70.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 16.5 years)
License	GPL-2
Depends	R (>= 2.10), methods, locfit, marray
Imports	graphics, grDevices, limma, marray, methods, stats
LinkingTo
Suggests	convert
SystemRequirements
Enhances
URL	http://olin.sysbiolab.eu
Depends On Me	OLINgui
Imports Me	OLINgui
Suggests Me	maigesPack
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OLIN_1.70.0.tar.gz
Windows Binary	OLIN_1.70.0.zip
macOS 10.13 (High Sierra)	OLIN_1.70.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OLIN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OLIN
Package Short Url	https://bioconductor.org/packages/OLIN/
Package Downloads Report	Download Stats