MBQN

DOI: 10.18129/B9.bioc.MBQN    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MBQN.

Mean/Median-balanced quantile normalization

Bioconductor version: 3.13

Modified quantile normalization for omics or other matrix-like data distorted in location and scale.

Author: Ariane Schad [aut, cre] , Clemens Kreutz [aut, ctb] , Eva Brombacher [aut, ctb]

Maintainer: Ariane Schad <ariane.schad at fdm.uni-freiburg.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MBQN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBQN")

 

HTML	R Script	MBQN Package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Normalization, Preprocessing, Proteomics, Software
Version	2.4.0
In Bioconductor since	BioC 3.10 (R-3.6) (2 years)
License	GPL-3 + file LICENSE
Depends	R (>= 4.0)
Imports	stats, graphics, utils, limma(>= 3.30.13), SummarizedExperiment(>= 1.10.0), preprocessCore(>= 1.36.0), BiocFileCache, rappdirs, rpx, xml2, RCurl, ggplot2, PairedData
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL	https://github.com/arianeschad/mbqn
BugReports	https://github.com/arianeschad/MBQN/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MBQN_2.4.0.tar.gz
Windows Binary	MBQN_2.4.0.zip
macOS 10.13 (High Sierra)	MBQN_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MBQN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MBQN
Package Short Url	https://bioconductor.org/packages/MBQN/
Package Downloads Report	Download Stats