HumanTranscriptomeCompendium

DOI: 10.18129/B9.bioc.HumanTranscriptomeCompendium    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see HumanTranscriptomeCompendium.

Tools to work with a Compendium of 181000 human transcriptome sequencing studies

Bioconductor version: 3.13

Provide tools for working with a compendium of human transcriptome sequences (originally htxcomp).

Author: Sean Davis, Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HumanTranscriptomeCompendium")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HumanTranscriptomeCompendium")

 

HTML	R Script	HumanTranscriptomeCompendium -- a cloud-resident collection of sequenced human transcriptomes
PDF		Reference Manual

Details

biocViews	Infrastructure, Sequencing, Software, Transcriptomics
Version	1.8.3
In Bioconductor since	BioC 3.9 (R-3.6) (2.5 years)
License	Artistic-2.0
Depends	R (>= 4.1)
Imports	shiny, ssrch, S4Vectors, SummarizedExperiment, utils
LinkingTo
Suggests	knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat, rhdf5client, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HumanTranscriptomeCompendium_1.8.3.tar.gz
Windows Binary	HumanTranscriptomeCompendium_1.8.3.zip
macOS 10.13 (High Sierra)	HumanTranscriptomeCompendium_1.8.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HumanTranscriptomeCompendium
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HumanTranscriptomeCompendium
Package Short Url	https://bioconductor.org/packages/HumanTranscriptomeCompendium/
Package Downloads Report	Download Stats