BioNetStat

DOI: 10.18129/B9.bioc.BioNetStat    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see BioNetStat.

Biological Network Analysis

Bioconductor version: 3.13

A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.

Author: Vinícius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge

Maintainer: Vinicius Jardim <viniciusjc at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioNetStat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioNetStat")

 

HTML		1. Interface tutorial
HTML		2. R console tutorial
HTML		3. Tutorial para o console do R
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology
Version	1.12.0
In Bioconductor since	BioC 3.7 (R-3.5) (3.5 years)
License	GPL (>= 3)
Depends	R (>= 4.0), shiny, igraph, shinyBS, pathview, DT
Imports	BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr, rmarkdown, markdown
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://github.com/jardimViniciusC/BioNetStat
BugReports	http://github.com/jardimViniciusC/BioNetStat/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioNetStat_1.12.0.tar.gz
Windows Binary	BioNetStat_1.12.0.zip
macOS 10.13 (High Sierra)	BioNetStat_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioNetStat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioNetStat
Package Short Url	https://bioconductor.org/packages/BioNetStat/
Package Downloads Report	Download Stats