ABarray

DOI: 10.18129/B9.bioc.ABarray    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ABarray.

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: 3.13

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

Citation (from within R, enter citation("ABarray")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABarray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABarray")

 

PDF ABarray gene expression
PDF ABarray gene expression GUI interface
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.60.0
In Bioconductor since BioC 1.9 (R-2.4) (15 years)
License GPL
Depends
Imports Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils
LinkingTo
Suggests limma, LPE
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABarray_1.60.0.tar.gz
Windows Binary ABarray_1.60.0.zip
macOS 10.13 (High Sierra) ABarray_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABarray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABarray
Package Short Url https://bioconductor.org/packages/ABarray/
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