retrieveCDNA {tximeta} | R Documentation |
This helper function retrieves the cDNA sequence of the transcripts used for expression quantification. This function either downloads or loads the transcript sequence from cache, it does not re-order or check against the rows of the SummarizedExperiment (which could be already summarized to genes for example).
retrieveCDNA(se, quiet = FALSE)
se |
the SummarizedExperiment |
quiet |
logical, suppress messages |
a DNAStringSet object
example(tximeta) cdna <- retrieveCDNA(se)