extract_monocle_info {tradeSeq}R Documentation

Extract info from Monocle models

Description

This function extracts info that will be used downstream to make CellDataSet objects compatible with a tradeSeq analysis

Usage

extract_monocle_info(cds)

Arguments

cds

A CellDataSet object.

Details

For now, this only works for the DDRTree dimentionality reduction. It is the one recommanded by the Monocle developers.

Value

A list with four objects. A pseudotime matrix and a cellWeights matrix that can be used as input to fitGAM or evaluateK, the reduced dimension matrix for the cells, and a list of length the number of lineages, containing the reduced dimension of each lineage.


[Package tradeSeq version 1.6.0 Index]