associated_peaks {target} | R Documentation |
This function selects overlapping peaks and regions, calculates the distance between them and score each peak.
associated_peaks(peaks, regions, regions_col, base = 1e+05)
peaks |
A GRanges object |
regions |
A GRanges object |
regions_col |
A character string |
base |
An integer to calculate distances relative to. |
A GRanges object. A similar object to peaks with three added metadata columns.
# load peaks and transcripts data data("real_peaks") data("real_transcripts") # associated peaks ap <- associated_peaks(real_peaks, real_transcripts, 'name2')