SYSargsList {systemPipeR} | R Documentation |
S4 class container for storing parameters of command-line- or R-based software.
SYSargsList
instances are constructed by the SYSargsList
function.
SYSargsList(args = NULL, targets = NULL, wf_file = NULL, input_file = NULL, dir_path = ".", inputvars = NULL, step_index = "default", silent = FALSE, restartProject = TRUE, rm_targets_col = NULL, dependency = NULL)
args |
|
targets |
the path to |
wf_file |
name and path to |
input_file |
name and path to |
dir_path |
full path to the directory with the |
inputvars |
variables list defined in the |
step_index |
character with the step index name. |
silent |
If set to |
restartProject |
restart previous workflow run. |
rm_targets_col |
targets file colunms to be removed. |
dependency |
step previous dependency. |
SYSargsList
object
Daniela Cassol
showClass("SYSargsList")
dir_path <- system.file("extdata/cwl/example/", package="systemPipeR") sal <- SYSargsList(wf_file="example.cwl", input_file="example_single.yml", dir_path = dir_path) sal cmdlist(sal)