check.output {systemPipeR} | R Documentation |
This function returns a logical vector indicating whether the expected output files for each workflow step exist.
check.output(args, subset = 1, index = 1)
args |
object of class |
subset |
name or numeric position of the values to be subsetting in the |
index |
A numeric index positions of the file in |
Daniela Cassol and Thomas Girke
subsetWF
## Construct SYSargs2 object targets <- system.file("extdata", "targets.txt", package="systemPipeR") dir_path <- system.file("extdata/cwl/hisat2/hisat2-se", package="systemPipeR") WF <- loadWorkflow(targets=targets, wf_file="hisat2-mapping-se.cwl", input_file="hisat2-mapping-se.yml", dir_path=dir_path) WF <- renderWF(WF, inputvars=c(FileName="_FASTQ_PATH1_", SampleName="_SampleName_")) WF check.output(WF)