runWF {systemPipeR} | R Documentation |
Function to execute all the code list specified in SYSargsList object.
runWF(args, warning.stop=FALSE, error.stop=TRUE, silent=FALSE)
args |
object of class |
warning.stop |
If set to |
error.stop |
If set to |
silent |
If set to |
It will return an SYSargsList
updated.
Daniela Cassol and Thomas Girke
See also as SYSargsList-class
.
## Not run: ## Construct SYSargsList object from Rmd file library(systemPipeRdata) script <- system.file("extdata/workflows/rnaseq", "systemPipeRNAseq.Rmd", package="systemPipeRdata") targets <- system.file("extdata", "targets.txt", package="systemPipeR") dir_path <- tempdir() SYSconfig <- initProject(projPath=dir_path, targets=targets, script=script, overwrite = TRUE) sysargslist <- initWF(sprconfig ="SPRconfig.yml") sysargslist <- configWF(x=sysargslist, input_steps = "1:3") sal <- runWF(args = sysargslist) ## End(Not run)