bisConversionControl {sesame}R Documentation

Compute internal bisulfite conversion control

Description

Compute GCT score for internal bisulfite conversion control. The function takes a SigSet as input. The higher the GCT score, the more likely the incomplete conversion.

Usage

bisConversionControl(sset, use.median = FALSE)

Arguments

sset

signal set

use.median

use median to compute GCT instead of mean

Value

GCT score (the higher, the more incomplete conversion)

Examples

sesameDataCache("HM450") # if not done yet
sset <- makeExampleSeSAMeDataSet('HM450')
bisConversionControl(sset)


[Package sesame version 1.10.5 Index]