qualityMask {sesame} | R Documentation |
Currently quality masking only supports three platforms
qualityMask( sset, mask.use.manifest = TRUE, manifest = NULL, mask.use.tcga = FALSE )
sset |
a |
mask.use.manifest |
use manifest to mask probes |
manifest |
the manifest file that contains mask column |
mask.use.tcga |
whether to use TCGA masking, only applies to HM450 |
a filtered SigSet
sesameDataCache("EPIC") # if not done yet sset <- sesameDataGet('EPIC.1.LNCaP')$sset sum(mask(sset)) sset.masked <- qualityMask(sset) sum(mask(sset.masked))