dyeBiasCorrTypeINorm {sesame} | R Documentation |
This function compares the Type-I Red probes and Type-I Grn probes and
generates and mapping to correct signal of the two channels to the middle.
The function takes one single SigSet
and returns a SigSet
with dye bias corrected.
dyeBiasCorrTypeINorm(sset) dyeBiasNL(sset)
sset |
a |
a SigSet
after dye bias correction.
sesameDataCache("EPIC") # if not done yet sset <- sesameDataGet('EPIC.1.LNCaP')$sset sset.db <- dyeBiasCorrTypeINorm(sset) sset <- sesameDataGet("HM450.1.TCGA.PAAD")$sset sset <- dyeBiasNL(sset)