inferTypeIChannel {sesame}R Documentation

Infer and reset color channel for Type-I probes instead of using what is specified in manifest. The results are stored to sset@extra$IGG and sset@extra$IRR slot.

Description

IGG => Type-I green that is inferred to be green IRR => Type-I red that is inferred to be red

Usage

inferTypeIChannel(
  sset,
  switch_failed = FALSE,
  verbose = FALSE,
  summary = FALSE
)

Arguments

sset

a SigSet

switch_failed

whether to switch failed probes (default to FALSE)

verbose

whether to print correction summary

summary

return summarized numbers only.

Value

a SigSet, or numerics if summary == TRUE

Examples


sset <- sesameDataGet('EPIC.1.LNCaP')$sset
inferTypeIChannel(sset)


[Package sesame version 1.10.5 Index]