get_genes_by_GO {scPipe} | R Documentation |
Get genes related to certain GO terms from biomart database
get_genes_by_GO(returns = "ensembl_gene_id", dataset = "mmusculus_gene_ensembl", go = NULL)
returns |
the gene id which is set as return. Default to be ensembl id
A possible list of attributes can be retrieved using the
function |
dataset |
Dataset you want to use. List of possible datasets can be
retrieved using the function |
go |
a vector of GO terms |
Get genes related to certain GO terms from biomart database
a vector of gene ids.
# get all genes under GO term GO:0005739 in mouse, return ensembl gene id get_genes_by_GO(returns="ensembl_gene_id", dataset="mmusculus_gene_ensembl", go=c('GO:0005739'))