weightMatrix<- {scHOT} | R Documentation |
Setter functions for scHOT objects
weightMatrix(x) <- value
x |
A scHOT object |
value |
The value the slot should take |
A scHOT object
library(SingleCellExperiment) data(MOB_subset) sce_MOB_subset <- MOB_subset$sce_MOB_subset scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset, assayName = "logcounts", positionType = "spatial", positionColData = c("x", "y")) W <- spatialWeightMatrix(colData(scHOT_spatial)[,slot(scHOT_spatial, "positionColData")]) weightMatrix(scHOT_spatial) <- W