PAmotif {ribosomeProfilingQC} | R Documentation |
Metaplot of P site distribution in all the CDS aligned by the start codon or stop codon.
PAmotif(reads, genome, plot = TRUE)
reads |
Output of assignReadingFrame or shiftReadsByFrame. |
genome |
A BSgenome object. |
plot |
Plot the motif or not. |
A pcm object
pcs <- readRDS(system.file("extdata", "samplePc.rds", package="ribosomeProfilingQC")) library(BSgenome.Drerio.UCSC.danRer10) #PAmotif(pcs, Drerio)