guess_id {regutools} | R Documentation |
Given a gene identifier, return the most likely gene_id type.
guess_id(gene, regulondb)
gene |
Character vector of gene identifiers (id, name, bnumber or gi). |
regulondb |
A |
A character(1)
vector with the name column guessed value.
Jesús Emiliano Sotelo Fonseca
## Connect to the RegulonDB database if necessary if (!exists("regulondb_conn")) regulondb_conn <- connect_database() ## Build the regulon db object e_coli_regulondb <- regulondb( database_conn = regulondb_conn, organism = "E.coli", database_version = "1", genome_version = "1" ) ## Lists all available identifiers for "araC" ## Guess name guess_id("araC", e_coli_regulondb) ## Guess id guess_id("ECK120000050", e_coli_regulondb) ## Guess bnumber guess_id("b0064", e_coli_regulondb)