readGMT {rWikiPathways} | R Documentation |
Reads any generic GMT file to produce a data frame of term-gene associations useful in enrichment analyses and other applications.
readGMT(file)
file |
Path to GMT file |
The returned data frame includes only terms and genes. If you want another data frame with terms and names, then see readGMTnames.
Data frame of term-gene associations
readGMTnames
readGMT(system.file("extdata","my_gmt_file.gmt", package="rWikiPathways"))