getParticipants {rBiopaxParser} | R Documentation |
This function is used internally by pathway2Graph to obtain physical entities participating in an interaction.
getParticipants( pwComponentList, instance, biopaxlevel, splitComplexMolecules = FALSE, useIDasNodenames = TRUE )
pwComponentList |
List of pathway components |
instance |
Biopax instance id |
biopaxlevel |
integer. Set the biopax level here if you supply a data.table directly. |
splitComplexMolecules |
logical. If TRUE complexes are split up into their components and the annotation of the components is added. |
useIDasNodenames |
logical. If TRUE nodes of the graph are named by their molecule IDs instead of using the NAME property. This can help with badly annotated/formatted databases. |
Nirupama Benis