listPathwayComponents {rBiopaxParser} | R Documentation |
This function returns a (unique) data.frame listing all component IDs, names and classes of the supplied pathway.
listPathwayComponents( biopax, id, includeSubPathways = TRUE, returnIDonly = FALSE, biopaxlevel = 3 )
biopax |
A biopax model |
id |
string. A pathway ID |
includeSubPathways |
logical. If TRUE the returned list will include subpathways and pathwaysteps as well. |
returnIDonly |
logical. If TRUE only IDs of the components are returned. This saves tiem for looking up names for every single ID. |
biopaxlevel |
integer. Set the biopax level here if you supply a data.table directly. |
data.frame
Frank Kramer
# load data data(biopaxexample) listPathwayComponents(biopax, id="pid_p_100002_wntpathway")