plotRegulatoryGraph {rBiopaxParser} | R Documentation |
This function takes a regulatory graph as generated by pathway2regulatoryGraph and plots it using standard layout options of layoutRegulatoryGraph. This function is a wrapper for layoutRegulatoryGraph with standard parameters. Subgraphs can be painted with different colors. This can be done by passing parameter subgraph a list of character vectors with node names.
plotRegulatoryGraph(mygraph, subgraphs = list(), layoutGraph = TRUE)
mygraph |
graphNEL, regulatory graph |
subgraphs |
list of character vectors with node names |
layoutGraph |
logical. If FALSE the graph is not laid out again but send directly to Rgraphviz::renderGraph. |
none
Frank Kramer
# load data data(biopaxexample) pwid1 = "pid_p_100002_wntpathway" pwid2 = "pid_p_100146_hespathway" mygraph = pathway2RegulatoryGraph(biopax, pwid1) plotRegulatoryGraph(mygraph)