getExpInteractionsInRefseq {r3Cseq} | R Documentation |
Get a list of genes that contain strong interaction signals in the experiment
getExpInteractionsInRefseq(obj,cutoff.qvalue=0.05,expanded_upstream=50e3,expanded_downstream=10e3)
obj |
obj is r3Cseq or r3CseqInBatch object |
cutoff.qvalue |
Numeric. The cutoff q-value (default=0.05) |
expanded_upstream |
Numeric. The expanded distance from the upstream of a gene start (default=50e3) |
expanded_downstream |
Numeric. The expanded distance from the downstream of a gene end (default =10e3) |
List of identified genes, which contain strong interaction signals
S. Thongjuea
# See the vignette