SilacProteinExperiment-constructor {pulsedSilac} | R Documentation |
Constructor function for the SilacProteinExperiment class object.
SilacProteinExperiment( assays, rowData = NULL, colData = NULL, conditionCol = NA, timeCol = NA, metadata = NULL )
assays |
A named |
rowData |
A |
colData |
A |
conditionCol |
A |
timeCol |
A |
metadata |
A |
An object of class SilacProteinExperiment
.
See SilacProteinExperiment-class for details.
See SilacProteinPeptideExperiment-accessors for details.
## assays assays_protein <- list(expression = matrix(1:9, ncol = 3)) ## colData colData <- data.frame(sample = c('A1', 'A2', 'A3'), condition = c('A', 'A', 'A'), time = c(1, 2, 3)) ## rowData rowData_protein <- data.frame(prot_id = LETTERS[1:3]) ## construct the ProteinExperiment protExp <- SilacProteinExperiment(assays = assays_protein, rowData = rowData_protein, colData = colData, conditionCol = 'condition', timeCol = 'time')