orgQuants {pRoloc} | R Documentation |
This function produces organelle-specific quantiles corresponding to the given classification scores.
orgQuants(object, fcol, scol, mcol = "markers", t, verbose = TRUE)
object |
An instance of class |
fcol |
The name of the prediction column in the
|
scol |
The name of the prediction score column in the
|
mcol |
The name of the column containing the training data in the
|
t |
The quantile threshold. |
verbose |
If |
A named vector
of organelle thresholds.
Lisa Breckels
getPredictions
to get organelle predictions based
on calculated thresholds.
library("pRolocdata") data(dunkley2006) res <- svmClassification(dunkley2006, fcol = "pd.markers", sigma = 0.1, cost = 0.5) ## 50% top predictions per class ts <- orgQuants(res, fcol = "svm", t = .5) getPredictions(res, fcol = "svm", t = ts)