cellTypeToGO {ontoProc} | R Documentation |
utilities for approximate matching of cell type terms to GO categories and annotations
cellTypeToGO(celltypeString, gotab, ...) cellTypeToGenes( celltypeString, gotab, orgDb, cols = c("ENSEMBL", "SYMBOL"), ... )
celltypeString |
character atom to be used to search GO terms using |
gotab |
a data.frame with columns GO (goids) and TERM (term strings)
|
... |
additional arguments to |
orgDb |
instances of orgDb |
cols |
columns to be retrieved in select operation |
data.frame
data.frame
Very primitive, uses agrep to try to find relevant terms.
library(org.Hs.eg.db) head(cellTypeToGO("serotonergic neuron", ontoProc::allGOterms)) head(cellTypeToGenes("serotonergic neuron", ontoProc::allGOterms, org.Hs.eg.db))