compare_cosmic_v3 {musicatk} | R Documentation |
Compare a result object to COSMIC V3 Signatures; Select exome or genome for SBS and only genome for DBS or Indel classes
compare_cosmic_v3( result, variant_class, sample_type, metric = "cosine", threshold = 0.9, result_name = deparse(substitute(result)) )
result |
A |
variant_class |
Compare to SBS, DBS, or Indel |
sample_type |
exome (SBS only) or genome |
metric |
One of |
threshold |
threshold for similarity |
result_name |
title for plot user result signatures |
Returns the comparisons
data(res) compare_cosmic_v3(res, "SBS", "genome", threshold = 0.8)