runModels {mirTarRnaSeq} | R Documentation |
This function defines the boundaries of mRNA vs miRNAs of interest to be analysed by the runModels function
runModels( combination, select_mRNA, select_miRNA, mode = NULL, family = glm_poisson(), scale = 1, cutoff = 0.05, all_coeff = NULL )
combination |
the combined file for mRNA and selected miRNAs output of combiner function |
select_mRNA |
the output of gene_variant function. |
select_miRNA |
The vector of miRNA/s to be investigated. |
mode |
the mode of analysis if more than one miRNA is being investigated multivariate "multi" or co-variate/interaction analysis "inter" is being used |
family |
gaussian or poisson |
scale |
factor to scale input data (for genes) by, prior to rounding and model
fitting. ( |
cutoff |
p-value cut off to call significance |
all_coeff |
if true only models with all negative coefficients will be selected if false at least one |
A list of p-vlaues, annova, and significance for each gene and the miRNA/s of interest
x <- runModels(Combine, geneVariant, "ebv-mir-bart9-5p")