simulate2phyloseq {microbiomeDASim} | R Documentation |
This function will convert simulated data into a phyloseq
object.
simulate2phyloseq(obj, missing = FALSE)
obj |
output from either |
missing |
logical indicator for objects from |
A phyloseq object
bug_gen <- gen_norm_microbiome(features=6, diff_abun_features=3, n_control=30, n_treat=20, control_mean=2, sigma=2, num_timepoints=4, t_interval=c(0, 3), rho=0.9, corr_str="compound", func_form="M", beta=c(4, 3), IP=c(2, 3.3, 6), missing_pct=0.2, missing_per_subject=2, miss_val=0, asynch_time=TRUE) bug_gen_phyloseq <- simulate2MRexperiment(bug_gen) class(bug_gen_phyloseq)