ICPPam50 {miRLAB}R Documentation

Identify miRNA targets by ICP and PAM50

Description

This function identifies miRNA targets by ICP and PAM50.

Usage

ICPPam50(d, nmiR, nmR, fiftymRNAsData)

Arguments

d

A matrix of expression of miRNAs and mRNAs with columns being miRNA or mRNA names and rows being samples

nmiR

Number of miRNAs

nmR

Number of mRNAs

fiftymRNAsData

A matrix of expression of 50 mRNAs in PAM50 with columns being mRNA names and rows being samples

Value

The matrix of causal effects of miRNAs and mRNAs with columns being miRNAs and rows being mRNAs

References

1. Parker, J. S., et al. (2009). "Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes." Journal of Clinical Oncology 27(8): 1160-1167.


[Package miRLAB version 1.22.0 Index]