checkMiRNAFamily {miRBaseConverter} | R Documentation |
This function checks the miRNA family for a list of miRNA Names.
checkMiRNAFamily(Accessions)
Accessions |
A character vector representing the miRNA Accessions in miRBase. |
A data frame with four columns. The number of rows equal to the input Accessions. The four columns are defined as below:
Accession : The input miRNA accessions.
miRNAName_v21 : The miRNA names (version 21) corresponding to the Accession.
FamilyAccession : The accession of the family .
Family : The family name.
Xu, Taosheng taosheng.x@gmail.com
data(miRNATest) ## The input is miRNA Accessions Accessions=miRNATest$Accession Family_Info1=checkMiRNAFamily(Accessions) ##The input is miRNA names miRNANames=miRNATest$miRNA_Name version=checkMiRNAVersion(miRNANames,verbose = TRUE) result=miRNA_NameToAccession(miRNANames,version=version) Accessions=result$Accession Family_Info2=checkMiRNAFamily(Accessions)