isoNorm {isomiRs} | R Documentation |
This function normalizes raw count matrix using
DESeq2::rlog()
function from DESeq2::DESeq2-package.
isoNorm(ids, formula = NULL, maxSamples = 50)
ids |
Object of class IsomirDataSeq. |
formula |
Formula that will be used for normalization. |
maxSamples |
Maximum number of samples to use with
|
IsomirDataSeq object with the normalized
count matrix in a slot. The normalized matrix
can be access with counts(ids, norm=TRUE)
.
data(mirData) ids <- isoCounts(mirData, minc=10, mins=6) ids <- isoNorm(mirData, formula=~condition) head(counts(ids, norm=TRUE))