CircosScatter {interacCircos} | R Documentation |
Create a point plot
CircosScatter( modulename, compareGroup = 1, radius = 140, innerCircleSize = 1, outerCircleSize = 5, innerCircleColor = "#F26223", outerCircleColor = "#F26223", innerPointType = "circle", outerPointType = "circle", innerrectWidth = 2, innerrectHeight = 2, outerrectWidth = 2, outerrectHeight = 2, outerCircleOpacity = 1, random_data = 0, animationDisplay = FALSE, animationInitialPositionX = 0, animationInitialPositionY = 0, animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ... )
modulename |
The name of the new module |
compareGroup |
The group number of this module in compare module |
radius |
Radius of scatter circle |
innerCircleSize, outerCircleSize |
If circle, inner and outer circle size |
innerCircleColor, outerCircleColor |
If circle, inner and outer circle color |
innerPointType, outerPointType |
The type for inner and outer point, could be circle or rect |
innerrectWidth, innerrectHeight |
If rect, inner width and height |
outerrectWidth, outerrectHeight |
If rect, inner width and height |
outerCircleOpacity |
If circle, the opacity for outer circle |
random_data |
Scatter position fluctuation |
animationDisplay |
Whether display animation |
animationInitialPositionX, animationInitialPositionY |
The initial coordinates for animation |
animationTime, animationDelay, animationType |
The time, delay and display type for animation |
data |
A list of value with details including chr, start, end, name, des, link and html. Details can be found on document |
... |
Ignored |
The module tracks for scatter modules
scatterData<-scatterExample Circos(CircosScatter('SCATTER01', data = scatterData,radius=180,innerCircleColor= "#3d6390", outerCircleColor= "#99cafe",random_data= 40))