.enrichment_map {hypeR} | R Documentation |
Plot enrichment map
.enrichment_map( hyp_df, genesets, similarity_metric = c("jaccard_similarity", "overlap_similarity"), similarity_cutoff = 0.2, pval_cutoff = 1, fdr_cutoff = 1, val = c("fdr", "pval"), top = NULL, title = "" )
hyp_df |
A dataframe from a hyp object |
genesets |
A list of genesets |
similarity_metric |
Metric to calculate geneset similarity |
similarity_cutoff |
Geneset similarity cutoff |
pval_cutoff |
Filter results to be less than pval cutoff |
fdr_cutoff |
Filter results to be less than fdr cutoff |
val |
Choose significance value shown above nodes e.g. c("fdr", "pval") |
top |
Limit number of pathways shown |
title |
Plot title |
A visNetwork object