.hiearchy_map {hypeR}R Documentation

Plot hiearchy map

Description

Plot hiearchy map

Usage

.hiearchy_map(
  hyp_df,
  rgsets_obj,
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  top = NULL,
  title = ""
)

Arguments

hyp_df

A dataframe from a hyp object

rgsets_obj

A relatonal geneset from a hyp object

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value displayed when hovering nodes e.g. c("fdr", "pval")

top

Limit number of pathways shown

title

Plot title

Value

A visNetwork object


[Package hypeR version 1.8.0 Index]