load_ABIS {granulator} | R Documentation |
load_ABIS
is used to load a demo dataset for the
deconvolution of PBMCs samples from published data under the accession
number GSE107011. The dataset consists of the following datasets:
bulkRNAseq_ABIS: PBMCs expression profiles
sigMatrix_ABIS_S0: Signature matrix for deconvolution of PBMCs in 17 cell types
sigMatrix_ABIS_S1: Signature matrix for deconvolution of PBMCs in 13 cell types
sigMatrix_ABIS_S2: Signature matrix for deconvolution of PBMCs in 11 cell types
sigMatrix_ABIS_S3: Signature matrix for deconvolution of PBMCs in 9 cell types
groundTruth_ABIS: PBMCS true cell type proprotions
load_ABIS()
Returns string confirming successfull loading of the data.
Vincent Kuettel, Sabina Pfister
# load data load_ABIS()