compSummary {goProfiles} | R Documentation |
Function to return a brief summary of the comparison between two (expanded) profiles.
compSummary(l, decs = 6)
l |
A list of comparison results as returned by a call to |
decs |
Number of decimal places to use in the output |
A data frame with the summarized results of each comparison.
The values contained are: Sqr.Eucl.Dist
: The squared euclidean distance,
Standard Err
: The standard error estimate, pValue
p value of the test,
low conf.int
Lower value for the desired confidence interval,
up conf.int
Upper value for the desired condfidence interval.
Alex Sanchez
# (NOT RUN) # data(prostateIds) # expandedWelsh <- expandedProfile(welsh01EntrezIDs[1:100], onto="MF", # level=2, orgPackage="org.Hs.eg.db") # expandedSingh <- expandedProfile(singh01EntrezIDs[1:100], onto="MF", # level=2, orgPackage="org.Hs.eg.db") # commonGenes <- intersect(welsh01EntrezIDs[1:100], singh01EntrezIDs[1:100]) # commonExpanded <- expandedProfile(commonGenes, onto="MF", level=2, orgPackage="org.Hs.eg.db") # comparedMF <-compareGOProfiles (pn=expandedWelsh, # qm = expandedSingh, # pqn0= commonExpanded) # print(comparedMF) # print(compSummary(comparedMF)) #