plot-methods {farms} | R Documentation |
This function visualizes the distribution of informative and non-informative genes of a given instance of INI_Calls-class
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## S4 method for signature 'INI_Calls,missing' plot(x)
x |
An instance of |
signature(x = "INI_Calls", y = "missing")
An instance of INI_Calls-class
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expFarms
, qFarms
,lFarms
,INIcalls
,summary
data(testAffyBatch) eset <- expFarms(testAffyBatch, bgcorrect.method = "none", pmcorrect.method = "pmonly", normalize.method = "constant") INIs <- INIcalls(eset) # apply I/NI calls summary(INIs) plot(INIs) # draws a density plot of I/NI-calls I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names NI_probes <- getNI_ProbeSets(INIs) # vector containing only non-informative probe sets names