plot_test {epidecodeR} | R Documentation |
Generates boxplot of distribution of log2FC of dysregulated genes and adjusted P value of signficance test of difference in mean log2FC between groups computed using one-way ANOVA test
plot_test(obj, title, ylab)
obj |
epidecodeR object - epidecodeR object generated using epidecodeR function |
title |
Title of the plot |
ylab |
Y-axis label |
Boxplot of distribution of log2FC of dysregulated genes between groups
events<-system.file("extdata","NOMO-1_ref_peaks.bed",package="epidecodeR") deg<-system.file("extdata", "FTOi.txt", package="epidecodeR") epiobj<-epidecodeR(events=events,deg=deg,pval=0.05,param=3,ints=c(2,4)) plot_test(epiobj,title="log2FC distribution based on m6A degree",ylab="log2FC")