makeplot {epidecodeR} | R Documentation |
Generate CDF plot using epidecodeR object generated using epidecodeR function
makeplot(obj, type, lim, title, xlab, ylab)
obj |
epidecodeR object - epidecodeR object generated using epidecodeR function |
type |
char - Type of CDF plot to generate; Accepted values 't': theoretical CDF plot; 'e': empirical CDF plot; 'both': Creates both theoretical and empirical plots. Default: both |
lim |
vector - Upper and lower limits of log2FC for X-axis |
title |
char - Title of the plot |
xlab |
char - X-axis label |
ylab |
char - Y-axis label |
A CDF plot
events<-system.file("extdata","NOMO-1_ref_peaks.bed", package="epidecodeR") deg<-system.file("extdata", "FTOi.txt", package="epidecodeR") epiobj<-epidecodeR(events=events,deg=deg,pval=0.05,param=3,ints=c(2,4)) makeplot(epiobj, lim = c(-10,10), xlab = "log2FC")