draw_phospho {drawProteins} | R Documentation |
draw_phospho
adds phosphorylation sites to ggplot2 object created by
draw_canvas
and draw_chains
.
It uses the data object.
The ggplot2 function
geom_point
is used to draw each of the
phosphorylation sites at their location as determined by data object.
draw_phospho(p, data = data, size = 2, fill = "yellow", show.legend = FALSE)
p |
ggplot2 object ideally created with |
data |
Dataframe of one or more rows with the following column names: 'type', 'description', 'begin', 'end', 'length', 'accession', 'entryName', 'taxid', 'order'. Must contain a minimum of one "CHAIN" as data$type. |
size |
Size of the circle |
fill |
Colour of the circle. |
show.legend |
Option to include legend in this layer |
A ggplot2 object either in the plot window or as an object with an additional geom_point layer.
# combines will with draw_domains to plot chains and phosphorylation sites. data("five_rel_data") p <- draw_canvas(five_rel_data) p <- draw_chains(p, five_rel_data, label_size = 1.25) draw_phospho(p, five_rel_data)