exportPlots {ddPCRclust} | R Documentation |
A convinience function that takes the results of the ddPCRclust algorithm, plots them using the ggplot2 library and a custom colour palette and saves the plots to a folder.
exportPlots(data, directory, annotations, format = "png", invert = FALSE)
data |
The result of the ddPCRclust algorithm |
directory |
The parent directory where the files should saved. A new folder with the experiment name will be created (see below). |
annotations |
Some basic metadata about the ddPCR reaction.
If you provided |
format |
Which file format to use. Can be either be a device function (e.g. png),
or one of 'eps', 'ps', 'tex' (pictex), 'pdf', 'jpeg', 'tiff', 'png', 'bmp', 'svg' or 'wmf' (windows only).
See also |
invert |
Invert the axis, e.g. x = Ch2.Amplitude, y = Ch1.Amplitude |
None
# Read files exampleFiles <- list.files(paste0(find.package('ddPCRclust'), '/extdata'), full.names = TRUE) files <- readFiles(exampleFiles[3]) # To read all example files uncomment the following line # files <- readFiles(exampleFiles[1:8]) # Read template template <- readTemplate(exampleFiles[9]) # Run ddPCRclust result <- ddPCRclust(files, template) # Export the plots dir.create('./Results') exportPlots(data = result, directory = './Results/', annotations = result$annotations)