run_lmfit {crossmeta}R Documentation

Perform lmFit analysis from limma.

Description

If paired samples, runs duplicateCorrelation to estimate intra-patient variance.

Usage

run_lmfit(eset, mod, rna_seq = TRUE)

Arguments

eset

Annotated eset created by load_raw. Non-selected samples and duplicate features removed by add_contrasts and iqr_replicates.

mod

Model matrix generated by diff_setup. With or without surrogate variables.

rna_seq

Is this an RNA-seq eset? Default is TRUE.

Value

result from call to limma lmFit.


[Package crossmeta version 1.18.0 Index]