get_vsd {crossmeta}R Documentation

Get variance stabilized data for exploratory data analysis

Description

Get variance stabilized data for exploratory data analysis

Usage

get_vsd(eset, rlog_cutoff = 50)

Arguments

eset

ExpressionSet loaded with load_raw. Requires group column in pData(eset) specifying sample groupings.

rlog_cutoff

Sample number above which will use vst instead of rlog. Default is 50.

Value

DESeqTransform with variance stabilized expression data.


[Package crossmeta version 1.18.0 Index]