filter_genes {crossmeta}R Documentation

Filter genes in RNA-seq ExpressionSet

Description

Uses filterByExpr to filter based on 'counts' assay or 'exprs' assay if 'counts' isn't available (for ARCHS4 data).

Usage

filter_genes(eset)

Arguments

eset

ExpressionSet with 'counts' assayDataElement and group column in pData

Value

filtered eset

See Also

filterByExpr

Examples


# example ExpressionSet
dds <- DESeq2::makeExampleDESeqDataSet()
eset <- Biobase::ExpressionSet(DESeq2::counts(dds))
eset$group <- dds$condition
eset <- filter_genes(eset)

[Package crossmeta version 1.18.0 Index]