filter_genes {crossmeta} | R Documentation |
Uses filterByExpr to filter based on 'counts' assay or 'exprs' assay if 'counts' isn't available (for ARCHS4 data).
filter_genes(eset)
eset |
ExpressionSet with 'counts' assayDataElement and group column in pData |
filtered eset
# example ExpressionSet dds <- DESeq2::makeExampleDESeqDataSet() eset <- Biobase::ExpressionSet(DESeq2::counts(dds)) eset$group <- dds$condition eset <- filter_genes(eset)