omnipath_ptm {cosmosR}R Documentation

OmniPath PTMs

Description

Collection of annotated enzyme-substrate post translational modifications obtained from OmniPath.

Usage

data(omnipath_ptm)

Format

An object of class “data.frame” with 39201 rows (PTMs) and 12 variables:

enzyme
substrate
enzyme_genesymbol
substrate_genesymbol
residue_type
residue_offset
modification
sources
references
curation_effort
n_references
n_resources

Source

Default resource collection of OmniPath: http://omnipathdb.org/ptms?fields=sources,references&genesymbols=1, version of Feb 5th, 2020.

References

Turei, D., Korcsmaros, T. and Saez-Rodriguesz, J. (2016) Nature Methods. 13(12), 966–967.

Examples

data(omnipath_ptm)


[Package cosmosR version 1.0.1 Index]