plotMarginals {consensus} | R Documentation |
Plots a series of marginal densities for each platform for either (a) average, (b) sensitivity or (c) precision.
plotMarginals(consfit, param=c("average", "sensitivity", "precision"), pal=palette(), xlim=NULL, ...)
consfit |
An object of class |
param |
Whether average (a_i), sensitivity (b_i) or precision (d_i) is plotted. |
pal |
Colour palette. Length must be at least the number of platforms/conditions. |
xlim |
Range of values to be plotted. If |
... |
Extra arguments passed to |
Precision is plotted on the log scale.
A plot to the current device.
Tim Peters <t.peters@garvan.org.au>
data("TCGA") tcga_mm <- MultiMeasure(names=c("U133A", "Huex", "Agilent", "RNASeq"), data=list(U133A, Huex, Agilent, RNASeq)) fit <- fitConsensus(tcga_mm) plotMarginals(fit, "sensitivity", brewer.pal(n = 4, name = "Dark2"))