getMSDtable {cellmigRation}R Documentation

Getting the Mean Square Displacement

Description

The MSD function automatically computes the mean square displacements across several sequential time intervals. MSD parameters are used to assess the area explored by cells over time.

Usage

getMSDtable(object)

Arguments

object

CellMig class object, which is a list of data frames resulted from the PreProcessing.

Value

A data frame of MSD values.

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

data(TrajectoryDataset)
rmDF <- TrajectoryDataset[seq(1,600,by=1), ]
rmTD <- CellMig(rmDF)
rmTD <- rmPreProcessing(rmTD,FrameN=100)
rmTD <- MSD(rmTD, sLAG=0.25, ffLAG=0.25, export=FALSE)
head(getMSDtable(rmTD))


[Package cellmigRation version 1.0.0 Index]