ForwardMigration {cellmigRation} | R Documentation |
The ForwardMigration function automatically generates data and plots for forward persistence and speed.
ForwardMigration( object, TimeInterval = 10, sfptPLOT = TRUE, afptPLOT = TRUE, sfpPLOT = TRUE, afpPLOT = TRUE, export = FALSE, ExpName = NULL )
object |
|
TimeInterval |
A numeric value of the time elapsed between successive frames in the time-lapse stack. |
sfptPLOT |
A logical vector that allows generating individual plots of persistence time vs speed per cell. Default is TRUE. |
afptPLOT |
A logical vector that allows generating a plot of persistence time vs speed for all cells. Default is TRUE. |
sfpPLOT |
A logical vector that allows generating individual plots of angular persistence vs speed per cell. Default is TRUE. |
afpPLOT |
A logical vector that allows generating a plot of angular persistence vs speed of all cells. Default is TRUE. |
export |
if 'TRUE' (default), exports function output to CSV file |
ExpName |
string, name of the experiment. Can be NULL |
An CellMig class Object with a data frame and plots. The data frame is stored in the ForMigtable slot.
Salim Ghannoum salim.ghannoum@medisin.uio.no
https://www.data-pulse.com/dev_site/cellmigration/
data(WSADataset) wsaDF <- WSADataset[seq(1,500,by=1),] wsaTD <- CellMig(wsaDF) wsaTD <- wsaPreProcessing(wsaTD,FrameN=55) wsaTD <-ForwardMigration(wsaTD, TimeInterval=10, sfptPLOT=FALSE, afptPLOT= FALSE,sfpPLOT= FALSE, afpPLOT= FALSE, export=FALSE)