plotDrugSetEnrichment {cTRAP} | R Documentation |
Plot drug set enrichment
plotDrugSetEnrichment( sets, stats, col = "rankProduct_rank", selectedSets = NULL, keyColSets = NULL, keyColStats = NULL )
sets |
Named list of characters: named sets containing compound
identifiers (obtain drug sets by running |
stats |
Named numeric vector or either a |
col |
Character: name of the column to use for statistics (only required
if class of |
selectedSets |
Character: drug sets to plot (if |
keyColSets |
Character: column from |
keyColStats |
Character: column from |
List of GSEA plots per drug set
Other functions for drug set enrichment analysis:
analyseDrugSetEnrichment()
,
loadDrugDescriptors()
,
prepareDrugSets()
descriptors <- loadDrugDescriptors() drugSets <- prepareDrugSets(descriptors) # Analyse drug set enrichment in ranked targeting drugs for a differential # expression profile data("diffExprStat") gdsc <- loadExpressionDrugSensitivityAssociation("GDSC") predicted <- predictTargetingDrugs(diffExprStat, gdsc) plotDrugSetEnrichment(drugSets, predicted)