wm-port {bigmelon} | R Documentation |
Manual page for methods for the extraenous functions from wateRmelon. For more details for specific functions see the respective manual pages in wateRmelon.
## S4 method for signature 'gdsn.class,gdsn.class' qual(norm, raw) ## S4 method for signature 'gds.class' predictSex(x, x.probes=NULL, pc=2, plot=TRUE, irlba=TRUE, center=FALSE, scale.=FALSE) ## S4 method for signature 'gdsn.class' predictSex(x, x.probes=NULL, pc=2, plot=TRUE, irlba=TRUE, center=FALSE, scale.=FALSE)
norm |
normalized node (gdsn.class) |
raw |
raw node (gdsn.class) |
x |
gdsclass object or node corresponding to betas |
x.probes |
Default is NULL, is required to be supplied in bigmelon. logical or numeric vector containing indicies of X chromosome probes |
pc |
The principal component to guess sex across (usually the 2nd one in most cases) |
plot |
Logical, indicated whether or not to plot the prediction |
irlba |
Logical, indicate whether or not to use the faster method to generate principal components |
center |
Logical, indicate whether or not to center data around 0 |
scale. |
Logical, indicate whether or not to scale data prior to prcomp |
For the full usage and description of any functions that link to this manual page, please visit the respective manual pages from wateRmelon.
Returns expected output of functions from wateRmelon