waterfall {Xeva} | R Documentation |
waterfall plot Creates waterfall plot for a given drug.
waterfall(object, res.measure, drug = NULL, group.by = NULL, summary.stat = c(";", "mean", "median"), tissue = NULL, model.id = NULL, model.type = NULL, type.color = "#cc4c02", legend.name = NULL, yname = NULL, title = NULL, sort = TRUE)
object |
The |
res.measure |
PDX model drug response measure |
drug |
Name of the drug |
group.by |
Group drug response data |
summary.stat |
How to summarize multiple values |
tissue |
Tissue type |
model.id |
Indicates which |
model.type |
Type of model, such as mutated or wild type |
type.color |
A list with colors used for each type in the legend |
legend.name |
Name of the legend |
yname |
Name for the y-axis |
title |
Title of the plot |
sort |
Default |
waterfall plot in ggplot2
data(brca) waterfall(brca, drug="binimetinib", res.measure="best.avg.response_published") ## example with model.type where we color the models by TP53 mutation type mut <- summarizeMolecularProfiles(brca,drug = "binimetinib", mDataType="mutation") model.type <- Biobase::exprs(mut)["TP53", ] waterfall(brca, drug="binimetinib", res.measure="best.avg.response_published", tissue="BRCA", model.id=names(model.type), model.type= model.type)