VariantExperiment-package {VariantExperiment} | R Documentation |
The package VariantExperiment
takes GDS file or VCF file as input, and save them in VariantExperiment object. Assay data are saved in GDSArray
objects and annotation data are saved in DelayedDataFrame
format, both of which remain on-disk until needed. Common manipulations like subsetting, mathematical transformation and statistical analysis are done easily and quickly in _R_.