add_p_q_values_statistics {Uniquorn}R Documentation

add_p_q_values_statistics

Description

A hypergeometric distribution-assumption allows to calculate the p-values for a significant or non-significant overlap in this function

Usage

add_p_q_values_statistics(g_query, match_t, p_value, ref_gen,
  minimum_matching_mutations, top_hits_per_library)

Arguments

g_query

IRanges object that contains the query variants

match_t

A table that contains the nubmber of matching variants

p_value

Threshold for the significance p-value

ref_gen

Reference genome version

minimum_matching_mutations

Manual lower amount of matching mutations require for a significant match between a query and a reference

top_hits_per_library

limits significant similarities to the first n hits

Details

add_p_q_values_statistics Calculates the p-values

Value

R table with a statistic


[Package Uniquorn version 2.12.0 Index]